STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcpT_32PilD-dependent protein PddA. (317 aa)    
Predicted Functional Partners:
APZ95042.1
Hypothetical protein.
  
     0.602
APZ95041.1
Hypothetical protein.
  
     0.596
hrdB_2
RNA polymerase principal sigma factor HrdB; Belongs to the sigma-70 factor family.
  
     0.575
APZ94690.1
Ethanolamine utilization protein.
  
     0.554
secG
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.
  
     0.523
APZ93059.1
Squalene/oxidosqualene cyclase.
  
    0.521
APZ95051.1
Putative zinc ribbon domain protein.
  
     0.518
APZ93220.1
Hypothetical protein.
  
     0.509
APZ96419.1
Hypothetical protein.
  
     0.509
APZ93441.1
Type II secretory pathway, component PulK.
  
   0.505
Your Current Organism:
Fuerstia marisgermanicae
NCBI taxonomy Id: 1891926
Other names: DSM 27554, F. marisgermanicae, LMG 27831, LMG:27831, Planctomycetes bacterium NH11, strain NH11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.