Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE24006.1 | SHE25530.1 | ACGLYG10_0204 | ACGLYG10_1746 | N-acetylmuramoyl-l-alanine amidase. | Dna translocase ftsk 4tm region. | 0.557 |
SHE24006.1 | SHE26618.1 | ACGLYG10_0204 | ACGLYG10_2869 | N-acetylmuramoyl-l-alanine amidase. | Hypothetical protein. | 0.489 |
SHE24657.1 | SHE25530.1 | ACGLYG10_0865 | ACGLYG10_1746 | Fibronectin type iii. | Dna translocase ftsk 4tm region. | 0.557 |
SHE24657.1 | SHE26618.1 | ACGLYG10_0865 | ACGLYG10_2869 | Fibronectin type iii. | Hypothetical protein. | 0.489 |
SHE25530.1 | SHE24006.1 | ACGLYG10_1746 | ACGLYG10_0204 | Dna translocase ftsk 4tm region. | N-acetylmuramoyl-l-alanine amidase. | 0.557 |
SHE25530.1 | SHE24657.1 | ACGLYG10_1746 | ACGLYG10_0865 | Dna translocase ftsk 4tm region. | Fibronectin type iii. | 0.557 |
SHE25530.1 | SHE26617.1 | ACGLYG10_1746 | ACGLYG10_2868 | Dna translocase ftsk 4tm region. | Parb/sulfiredoxin; Belongs to the ParB family. | 0.847 |
SHE25530.1 | SHE26618.1 | ACGLYG10_1746 | ACGLYG10_2869 | Dna translocase ftsk 4tm region. | Hypothetical protein. | 0.572 |
SHE25530.1 | dnaA | ACGLYG10_1746 | ACGLYG10_2876 | Dna translocase ftsk 4tm region. | Bacterial chromosomal replication initiator (dnaa) signature; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.679 |
SHE25530.1 | ftsZ | ACGLYG10_1746 | ACGLYG10_2722 | Dna translocase ftsk 4tm region. | Cell division protein ftsz signature; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.896 |
SHE26617.1 | SHE25530.1 | ACGLYG10_2868 | ACGLYG10_1746 | Parb/sulfiredoxin; Belongs to the ParB family. | Dna translocase ftsk 4tm region. | 0.847 |
SHE26617.1 | SHE26618.1 | ACGLYG10_2868 | ACGLYG10_2869 | Parb/sulfiredoxin; Belongs to the ParB family. | Hypothetical protein. | 0.996 |
SHE26617.1 | SHE26620.1 | ACGLYG10_2868 | ACGLYG10_2871 | Parb/sulfiredoxin; Belongs to the ParB family. | Hypothetical protein. | 0.707 |
SHE26617.1 | SHE26621.1 | ACGLYG10_2868 | ACGLYG10_2872 | Parb/sulfiredoxin; Belongs to the ParB family. | Membrane insertase oxa1/alb3/yidc. | 0.606 |
SHE26617.1 | dnaA | ACGLYG10_2868 | ACGLYG10_2876 | Parb/sulfiredoxin; Belongs to the ParB family. | Bacterial chromosomal replication initiator (dnaa) signature; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.709 |
SHE26617.1 | ftsZ | ACGLYG10_2868 | ACGLYG10_2722 | Parb/sulfiredoxin; Belongs to the ParB family. | Cell division protein ftsz signature; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.759 |
SHE26617.1 | rnpA | ACGLYG10_2868 | ACGLYG10_2874 | Parb/sulfiredoxin; Belongs to the ParB family. | Bacterial ribonuclease p protein component signature; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.499 |
SHE26617.1 | rsmG | ACGLYG10_2868 | ACGLYG10_2870 | Parb/sulfiredoxin; Belongs to the ParB family. | Rrna small subunit methyltransferase g; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.909 |
SHE26618.1 | SHE24006.1 | ACGLYG10_2869 | ACGLYG10_0204 | Hypothetical protein. | N-acetylmuramoyl-l-alanine amidase. | 0.489 |
SHE26618.1 | SHE24657.1 | ACGLYG10_2869 | ACGLYG10_0865 | Hypothetical protein. | Fibronectin type iii. | 0.489 |
page 1 of 4