STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFX00606.1ABC-2 type transport system ATP-binding protein. (308 aa)    
Predicted Functional Partners:
SFX00633.1
ABC-2 type transport system permease protein.
 
    0.974
SFX00654.1
Cytochrome c oxidase assembly protein subunit 15.
     
 0.793
SFX00558.1
Iron-regulated ABC transporter membrane component SufB.
       0.790
SFX00583.1
Predicted transcriptional regulator, ArsR family.
       0.790
SFX00417.1
Metal-sulfur cluster biosynthetic enzyme.
       0.722
SFX00442.1
Nitrogen fixation protein NifU.
       0.722
SFX09610.1
Oleandomycin transport system permease protein.
 
 0.636
SFX00512.1
Rieske [2Fe-2S] domain-containing protein.
       0.605
SFY16972.1
ABC-2 type transport system permease protein.
 
    0.593
SFX43693.1
ABC-2 type transport system permease protein.
 
 
 0.584
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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