STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFX03433.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
SFX03456.1
TerF vWA domain-containing protein.
       0.878
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.618
SFX03489.1
Membrane associated serine protease, rhomboid family.
       0.593
SFX27618.1
NADPH:quinone reductase.
       0.557
SFX03404.1
Pyridoxamine 5'-phosphate oxidase.
       0.543
SFX86011.1
Cytosine deaminase.
 
    0.460
SFY32826.1
Transcriptional regulator.
  
     0.434
hutH
Histidine ammonia-lyase.
 
  
 0.426
SFX77260.1
Histidine ammonia-lyase.
 
  
 0.421
SFX45410.1
Histidine ammonia-lyase.
 
  
 0.420
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.