Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFX15998.1 | SFX16045.1 | SAMN02787144_1001727 | SAMN02787144_1001729 | Histidine triad (HIT) family protein. | Hypothetical protein. | 0.700 |
SFX15998.1 | SFX16069.1 | SAMN02787144_1001727 | SAMN02787144_1001730 | Histidine triad (HIT) family protein. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.658 |
SFX15998.1 | SFX16091.1 | SAMN02787144_1001727 | SAMN02787144_1001731 | Histidine triad (HIT) family protein. | Nitroalkane oxidase. | 0.658 |
SFX15998.1 | SFX16149.1 | SAMN02787144_1001727 | SAMN02787144_1001734 | Histidine triad (HIT) family protein. | Glyoxylase, beta-lactamase superfamily II. | 0.624 |
SFX15998.1 | SFX16167.1 | SAMN02787144_1001727 | SAMN02787144_1001735 | Histidine triad (HIT) family protein. | Protein of unknown function. | 0.616 |
SFX15998.1 | dnaJ | SAMN02787144_1001727 | SAMN02787144_1001732 | Histidine triad (HIT) family protein. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.662 |
SFX15998.1 | hrcA | SAMN02787144_1001727 | SAMN02787144_1001733 | Histidine triad (HIT) family protein. | Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. | 0.629 |
SFX15998.1 | rnz | SAMN02787144_1001727 | SAMN02787144_1001726 | Histidine triad (HIT) family protein. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.859 |
SFX16045.1 | SFX15998.1 | SAMN02787144_1001729 | SAMN02787144_1001727 | Hypothetical protein. | Histidine triad (HIT) family protein. | 0.700 |
SFX16045.1 | SFX16069.1 | SAMN02787144_1001729 | SAMN02787144_1001730 | Hypothetical protein. | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.769 |
SFX16045.1 | SFX16091.1 | SAMN02787144_1001729 | SAMN02787144_1001731 | Hypothetical protein. | Nitroalkane oxidase. | 0.769 |
SFX16045.1 | SFX16149.1 | SAMN02787144_1001729 | SAMN02787144_1001734 | Hypothetical protein. | Glyoxylase, beta-lactamase superfamily II. | 0.649 |
SFX16045.1 | SFX16167.1 | SAMN02787144_1001729 | SAMN02787144_1001735 | Hypothetical protein. | Protein of unknown function. | 0.649 |
SFX16045.1 | dnaJ | SAMN02787144_1001729 | SAMN02787144_1001732 | Hypothetical protein. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.686 |
SFX16045.1 | hrcA | SAMN02787144_1001729 | SAMN02787144_1001733 | Hypothetical protein. | Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. | 0.686 |
SFX16045.1 | rnz | SAMN02787144_1001729 | SAMN02787144_1001726 | Hypothetical protein. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.693 |
SFX16069.1 | SFX15998.1 | SAMN02787144_1001730 | SAMN02787144_1001727 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Histidine triad (HIT) family protein. | 0.658 |
SFX16069.1 | SFX16045.1 | SAMN02787144_1001730 | SAMN02787144_1001729 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein. | 0.769 |
SFX16069.1 | SFX16091.1 | SAMN02787144_1001730 | SAMN02787144_1001731 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Nitroalkane oxidase. | 0.878 |
SFX16069.1 | SFX16149.1 | SAMN02787144_1001730 | SAMN02787144_1001734 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Glyoxylase, beta-lactamase superfamily II. | 0.684 |
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