SFY01091.1 protein (Streptomyces atratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFY01091.1

Hypothetical protein. (42 aa)

Predicted Functional Partners:

SFY39674.1

0.982

SFY01112.1

0.609

SFY01070.1

0.590

SFY00546.1

0.575

SFY05710.1

0.575

SFY18213.1

0.542

SFW98370.1

0.540

SFX14800.1

0.540

SFY38216.1

0.540

SFX89077.1

0.534

Your Current Organism:

Streptomyces atratus

NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFW98370.1	SFX89077.1	SAMN02787144_100111	SAMN02787144_1007235	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	PAS domain S-box-containing protein.	0.799
SFW98370.1	SFY00546.1	SAMN02787144_100111	SAMN02787144_100978	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.408
SFW98370.1	SFY01091.1	SAMN02787144_100111	SAMN02787144_1009104	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Hypothetical protein.	0.540
SFW98370.1	SFY05710.1	SAMN02787144_100111	SAMN02787144_101031	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Histidine kinase.	0.411
SFW98370.1	SFY18213.1	SAMN02787144_100111	SAMN02787144_1012171	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.792
SFW98370.1	SFY39674.1	SAMN02787144_100111	SAMN02787144_10245	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.998
SFX14800.1	SFX89077.1	SAMN02787144_1001668	SAMN02787144_1007235	GAF domain-containing protein.	PAS domain S-box-containing protein.	0.799
SFX14800.1	SFY00546.1	SAMN02787144_1001668	SAMN02787144_100978	GAF domain-containing protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.425
SFX14800.1	SFY01091.1	SAMN02787144_1001668	SAMN02787144_1009104	GAF domain-containing protein.	Hypothetical protein.	0.540
SFX14800.1	SFY05710.1	SAMN02787144_1001668	SAMN02787144_101031	GAF domain-containing protein.	Histidine kinase.	0.416
SFX14800.1	SFY18213.1	SAMN02787144_1001668	SAMN02787144_1012171	GAF domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.792
SFX14800.1	SFY39674.1	SAMN02787144_1001668	SAMN02787144_10245	GAF domain-containing protein.	Signal transduction histidine kinase.	0.998
SFX89077.1	SFW98370.1	SAMN02787144_1007235	SAMN02787144_100111	PAS domain S-box-containing protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.799
SFX89077.1	SFX14800.1	SAMN02787144_1007235	SAMN02787144_1001668	PAS domain S-box-containing protein.	GAF domain-containing protein.	0.799
SFX89077.1	SFY00546.1	SAMN02787144_1007235	SAMN02787144_100978	PAS domain S-box-containing protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.799
SFX89077.1	SFY01091.1	SAMN02787144_1007235	SAMN02787144_1009104	PAS domain S-box-containing protein.	Hypothetical protein.	0.534
SFX89077.1	SFY05710.1	SAMN02787144_1007235	SAMN02787144_101031	PAS domain S-box-containing protein.	Histidine kinase.	0.799
SFX89077.1	SFY18213.1	SAMN02787144_1007235	SAMN02787144_1012171	PAS domain S-box-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.988
SFX89077.1	SFY38216.1	SAMN02787144_1007235	SAMN02787144_102229	PAS domain S-box-containing protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.799
SFX89077.1	SFY39674.1	SAMN02787144_1007235	SAMN02787144_10245	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999