SFY25482.1 protein (Streptomyces atratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFY25482.1

Bifunctional DNA primase/polymerase, N-terminal. (219 aa)

Predicted Functional Partners:

SFY31267.1

0.755

SFX45881.1

0.751

SFY21971.1

0.747

SFY38342.1

0.731

SFY30698.1

0.723

SFX25604.1

0.716

SFY03205.1

0.713

SFY08513.1

0.705

SFX94043.1

0.700

SFY43643.1

0.697

Your Current Organism:

Streptomyces atratus

NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFX25604.1	SFX45881.1	SAMN02787144_100211	SAMN02787144_1003176	ATP synthase protein I.	Small secreted domain.	0.550
SFX25604.1	SFY03205.1	SAMN02787144_100211	SAMN02787144_1009226	ATP synthase protein I.	Small secreted domain.	0.495
SFX25604.1	SFY08513.1	SAMN02787144_100211	SAMN02787144_1010224	ATP synthase protein I.	Sirohydrochlorin ferrochelatase.	0.601
SFX25604.1	SFY21971.1	SAMN02787144_100211	SAMN02787144_101415	ATP synthase protein I.	Hypothetical protein.	0.565
SFX25604.1	SFY25482.1	SAMN02787144_100211	SAMN02787144_101567	ATP synthase protein I.	Bifunctional DNA primase/polymerase, N-terminal.	0.716
SFX25604.1	SFY31267.1	SAMN02787144_100211	SAMN02787144_1017126	ATP synthase protein I.	Hypothetical protein.	0.647
SFX25604.1	SFY38342.1	SAMN02787144_100211	SAMN02787144_102255	ATP synthase protein I.	Serine/threonine-protein kinase RsbW.	0.558
SFX45881.1	SFX25604.1	SAMN02787144_1003176	SAMN02787144_100211	Small secreted domain.	ATP synthase protein I.	0.550
SFX45881.1	SFX94043.1	SAMN02787144_1003176	SAMN02787144_100848	Small secreted domain.	Hypothetical protein.	0.585
SFX45881.1	SFY08513.1	SAMN02787144_1003176	SAMN02787144_1010224	Small secreted domain.	Sirohydrochlorin ferrochelatase.	0.563
SFX45881.1	SFY21971.1	SAMN02787144_1003176	SAMN02787144_101415	Small secreted domain.	Hypothetical protein.	0.760
SFX45881.1	SFY25482.1	SAMN02787144_1003176	SAMN02787144_101567	Small secreted domain.	Bifunctional DNA primase/polymerase, N-terminal.	0.751
SFX45881.1	SFY30698.1	SAMN02787144_1003176	SAMN02787144_101779	Small secreted domain.	Hypothetical protein.	0.740
SFX45881.1	SFY31267.1	SAMN02787144_1003176	SAMN02787144_1017126	Small secreted domain.	Hypothetical protein.	0.698
SFX45881.1	SFY38342.1	SAMN02787144_1003176	SAMN02787144_102255	Small secreted domain.	Serine/threonine-protein kinase RsbW.	0.709
SFX45881.1	SFY43643.1	SAMN02787144_1003176	SAMN02787144_103825	Small secreted domain.	M6 family metalloprotease domain-containing protein.	0.526
SFX94043.1	SFX45881.1	SAMN02787144_100848	SAMN02787144_1003176	Hypothetical protein.	Small secreted domain.	0.585
SFX94043.1	SFY03205.1	SAMN02787144_100848	SAMN02787144_1009226	Hypothetical protein.	Small secreted domain.	0.500
SFX94043.1	SFY08513.1	SAMN02787144_100848	SAMN02787144_1010224	Hypothetical protein.	Sirohydrochlorin ferrochelatase.	0.530
SFX94043.1	SFY21971.1	SAMN02787144_100848	SAMN02787144_101415	Hypothetical protein.	Hypothetical protein.	0.597