STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFY27720.1RNA polymerase sigma-70 factor, ECF subfamily. (212 aa)    
Predicted Functional Partners:
SFX26861.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.797
SFY11270.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.727
SFY22035.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.704
SFY38430.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.692
SFY45227.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.616
SFX47175.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.574
SFY40916.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.565
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.546
SFY13834.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.540
SFX28962.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
0.529
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.