STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFY30199.1Helix-turn-helix domain-containing protein. (293 aa)    
Predicted Functional Partners:
SFY30186.1
Protein of unknown function.
 
     0.899
SFY22778.1
Protein of unknown function.
  
     0.764
SFX68151.1
S-adenosyl methyltransferase.
  
     0.756
SFX67449.1
Protein of unknown function.
  
     0.756
SFX99508.1
S-adenosyl methyltransferase.
  
     0.756
SFX67429.1
S-adenosyl methyltransferase.
  
     0.754
SFX68132.1
S-adenosyl methyltransferase.
  
     0.747
SFY42803.1
S-adenosyl methyltransferase.
  
     0.733
SFY28505.1
O-Methyltransferase involved in polyketide biosynthesis.
  
     0.731
SFX95517.1
Protein of unknown function.
  
     0.719
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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