STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFY29882.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (225 aa)    
Predicted Functional Partners:
SFY39674.1
Signal transduction histidine kinase.
  
 0.992
SFY29876.1
Signal transduction histidine kinase.
 
 0.986
SFY36566.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.917
SFX94006.1
Signal transduction histidine kinase.
 
 0.906
SFX78663.1
Signal transduction histidine kinase.
 
 0.899
SFY45294.1
Two-component system, OmpR family, sensor histidine kinase VanS.
 
 0.878
SFY36127.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.870
SFY29917.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 
  0.854
SFY16107.1
Signal transduction histidine kinase.
  0.839
SFY11300.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
  
 0.838
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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