STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFY42805.1Hypothetical protein. (312 aa)    
Predicted Functional Partners:
SFY42807.1
Protein of unknown function.
       0.859
SFY12155.1
Aspartyl/Asparaginyl beta-hydroxylase.
  
     0.715
SFY02809.1
Microbial collagenase.
   
  
 0.613
SFX35464.1
Collagen triple helix repeat-containing protein.
  
    0.602
SFY19600.1
Hypothetical protein.
  
   0.591
SFY40849.1
Hypothetical protein.
  
    0.568
SFX75527.1
UvrD/REP helicase N-terminal domain-containing protein.
  
     0.549
SFY17109.1
EF-hand domain pair.
  
     0.548
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.546
SFY43534.1
Hypothetical protein.
  
 
   0.545
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.