STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFY44351.1Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (395 aa)    
Predicted Functional Partners:
SFY44349.1
Glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.916
SFY44353.1
Hypothetical protein.
 
     0.913
SFY07141.1
Galactonate dehydratase.
 
  
 
0.820
SFX55696.1
Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
  
  
 
0.665
SFY44358.1
Acetyltransferase (GNAT) domain-containing protein.
 
     0.658
SFY44348.1
Transcriptional regulator, IclR family.
 
     0.624
SFY44135.1
Phosphopantetheine attachment site.
 
 
  0.609
SFX44318.1
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.597
SFX69866.1
Sugar lactone lactonase YvrE.
 
  
 0.597
SFY03363.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
  
  0.581
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.