STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFY44519.1dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (192 aa)    
Predicted Functional Partners:
SFX16903.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 0.993
SFX16872.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 0.987
SFY41833.1
dTDP-4-dehydrorhamnose reductase.
 
 
 0.972
SFX16924.1
Glucose-1-phosphate thymidylyltransferase.
 
 0.968
SFY44528.1
dTDP-glucose 4,6-dehydratase.
  
 
  0.951
SFY44531.1
Glucose-1-phosphate cytidylyltransferase.
 
 
 0.912
SFY44521.1
CDP-glucose 4,6-dehydratase.
 
 
  0.897
SFX77487.1
Aminotransferase EvaB; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.843
SFX55909.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.832
SFY41213.1
Mannose-1-phosphate guanylyltransferase / phosphomannomutase.
  
 0.828
Your Current Organism:
Streptomyces atratus
NCBI taxonomy Id: 1893
Other names: ATCC 14046, DSM 41673, IFO 3897, JCM 3386, NBRC 3897, NRRL B-16927, S. atratus
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