Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AF331_07720 | deoA | GCA_900166615_02728 | GCA_900166615_03721 | Unannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | Unannotated protein. | 0.580 |
AF331_07720 | hisD | GCA_900166615_02728 | GCA_900166615_02098 | Unannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | Unannotated protein; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.640 |
AF331_07720 | prfC | GCA_900166615_02728 | GCA_900166615_02729 | Unannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | Unannotated protein; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.419 |
deoA | AF331_07720 | GCA_900166615_03721 | GCA_900166615_02728 | Unannotated protein. | Unannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | 0.580 |
hisD | AF331_07720 | GCA_900166615_02098 | GCA_900166615_02728 | Unannotated protein; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | Unannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | 0.640 |
prfC | AF331_07720 | GCA_900166615_02729 | GCA_900166615_02728 | Unannotated protein; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Unannotated protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | 0.419 |