STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OIU72846.1Glucosylceramidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family. (449 aa)    
Predicted Functional Partners:
OIU72847.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.944
OIU69689.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.812
OIU72735.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.807
OIU69683.1
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.693
OIU72585.1
Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.689
OIU72835.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.688
OIU68774.1
Glucosamine-6-phosphate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.664
ilvA
Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
     
 0.653
bglX
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.
  
 0.524
OIU73163.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.509
Your Current Organism:
Bacillus aquimaris
NCBI taxonomy Id: 189382
Other names: B. aquimaris, Bacillus aquimaris Yoon et al. 2003, Bacillus sp. JP44SK28, JCM 11545, KCCM 41589, strain TF-12, strain TF12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.