KOG84256.1 protein (Kitasatospora aureofaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KOG84256.1

DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)

Predicted Functional Partners:

KOG84257.1

0.946

KOG84258.1

0.883

KOG72495.1

0.864

KOG69813.1

0.864

KOG67318.1

0.757

KOG75043.1

0.659

KOG67893.1

0.659

KOG71338.1

0.616

KOG84255.1

0.584

KOG84254.1

0.583

Your Current Organism:

Kitasatospora aureofaciens

NCBI taxonomy Id: 1894
Other names: ATCC 10762, ATCC 23884, BCRC 11610, CBS 434.51, CBS 664.68, CCRC 11610, CCRC:11610, CECT 3206, CIP 57.11, DSM 40127, HAMBI 313, HUT 6048, HUT 6097, ICMP 499, IFO 12594, IFO 12843, IFO 3712, ISP 5127, JCM 4008, JCM 4624, K. aureofaciens, KACC 20180, LMG 5968, LMG:5968, NBRC 12594, NBRC 12843, NBRC 3712, NCAIM B.01479, NCIMB 8234, NRRL 2209, NRRL B-5404, NRRL-ISP 5127, NRRL-ISP:5127, NRRL:B:5404, RIA 57, Streptomyces aureifaciens, Streptomyces aureofaciens, Streptomyces aureofaciens subsp. aureofaciens, VKM Ac-771

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOG67318.1	KOG84256.1	ADK78_41165	ADK78_01400	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
KOG67893.1	KOG84256.1	ADK78_39245	ADK78_01400	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
KOG69813.1	KOG71338.1	ADK78_31830	ADK78_24950	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KOG69813.1	KOG84256.1	ADK78_31830	ADK78_01400	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
KOG69813.1	KOG84257.1	ADK78_31830	ADK78_01405	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
KOG71338.1	KOG69813.1	ADK78_24950	ADK78_31830	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KOG71338.1	KOG72495.1	ADK78_24950	ADK78_20290	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KOG71338.1	KOG84256.1	ADK78_24950	ADK78_01400	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
KOG72495.1	KOG71338.1	ADK78_20290	ADK78_24950	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KOG72495.1	KOG84256.1	ADK78_20290	ADK78_01400	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
KOG72495.1	KOG84257.1	ADK78_20290	ADK78_01405	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
KOG75043.1	KOG84256.1	ADK78_13930	ADK78_01400	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
KOG84254.1	KOG84255.1	ADK78_01390	ADK78_01395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
KOG84254.1	KOG84256.1	ADK78_01390	ADK78_01400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
KOG84254.1	KOG84257.1	ADK78_01390	ADK78_01405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
KOG84254.1	KOG84258.1	ADK78_01390	ADK78_01410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KOG84255.1	KOG84254.1	ADK78_01395	ADK78_01390	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
KOG84255.1	KOG84256.1	ADK78_01395	ADK78_01400	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
KOG84255.1	KOG84257.1	ADK78_01395	ADK78_01405	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
KOG84255.1	KOG84258.1	ADK78_01395	ADK78_01410	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About