STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ66807.1Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
AIQ66806.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.950
AIQ66808.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.903
AIQ70307.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.821
AIQ67104.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.820
AIQ66413.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.809
AIQ68111.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.809
AIQ68285.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.809
AIQ68788.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.809
AIQ68811.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.809
AIQ67660.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.808
Your Current Organism:
Paenibacillus graminis
NCBI taxonomy Id: 189425
Other names: ATCC BAA-95, DSM 15220, LMG 19080, LMG:19080, P. graminis, Paenibacillus graminis Berge et al. 2002, Paenibacillus sp. RSA19, strain RSA19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.