STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fucISugar isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose. (588 aa)    
Predicted Functional Partners:
AIQ68335.1
Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family.
 
  
 0.971
AIQ68333.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.940
AIQ68334.1
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.839
AIQ67674.1
Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.816
AIQ67900.1
Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.816
AIQ70304.1
Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.805
AIQ69290.1
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.771
rhaA
Sugar isomerase; Catalyzes the formation of L-rhamnulose from L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.611
AIQ68331.1
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.586
AIQ67665.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.543
Your Current Organism:
Paenibacillus graminis
NCBI taxonomy Id: 189425
Other names: ATCC BAA-95, DSM 15220, LMG 19080, LMG:19080, P. graminis, Paenibacillus graminis Berge et al. 2002, Paenibacillus sp. RSA19, strain RSA19
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