STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ71967.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)    
Predicted Functional Partners:
AIQ74269.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.990
AIQ73419.1
Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.966
AIQ73518.1
Pectin methylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.961
AIQ72470.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.693
AIQ75296.1
Rhamnogalacturonate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.681
AIQ74480.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.679
AIQ73887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.633
AIQ73747.1
Arabinan endo-1,5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.603
AIQ73809.1
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.598
AIQ75360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
Your Current Organism:
Paenibacillus odorifer
NCBI taxonomy Id: 189426
Other names: ATCC BAA-93, DSM 15391, JCM 21743, LMG 19079, LMG:19079, P. odorifer, Paenibacillus odorifer Berge et al. 2002, Paenibacillus sp. TOD45, strain TOD45
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.