STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ73060.1Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)    
Predicted Functional Partners:
AIQ73061.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.920
AIQ73052.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.909
AIQ73062.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.834
AIQ74263.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.813
AIQ74508.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.812
AIQ75817.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.812
AIQ77154.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.812
AIQ72205.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.808
AIQ73732.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.808
AIQ76439.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.808
Your Current Organism:
Paenibacillus odorifer
NCBI taxonomy Id: 189426
Other names: ATCC BAA-93, DSM 15391, JCM 21743, LMG 19079, LMG:19079, P. odorifer, Paenibacillus odorifer Berge et al. 2002, Paenibacillus sp. TOD45, strain TOD45
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