Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LA_0352Hypothetical protein. (413 aa)    
Predicted Functional Partners:
LA_1470
Hypothetical protein.
   
 0.815
LA_3998
Cholesterol oxidase.
  
 0.646
LA_0351
TPR-repeat-containing protein.
   
  0.618
LA_2446
Hypothetical protein.
  
 0.568
LA_3848
Hypothetical protein.
    
 0.542
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 0.511
sul1
Bifunctional permease/carbonic anhydrase.
    
 
 0.504
spoVK
AAA family ATPase.
    
  0.488
LA_4036
ATP-dependent RNA helicase.
    
 0.464
gmk
Guanylate kinase.
    
 0.461
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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