Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LA_0274 | LA_0390 | LA_0274 | LA_0390 | Lipoprotein releasing system, LolD ATPase component. | Hypothetical protein. | 0.499 |
LA_0274 | clpA | LA_0274 | LA_0391 | Lipoprotein releasing system, LolD ATPase component. | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | 0.535 |
LA_0274 | lolE | LA_0274 | LA_0273 | Lipoprotein releasing system, LolD ATPase component. | Permease component of lipoprotein releasing system. | 0.994 |
LA_0274 | miaB | LA_0274 | LA_0388 | Lipoprotein releasing system, LolD ATPase component. | 2-methylthioadenine synthetase. | 0.576 |
LA_0389 | LA_0390 | LA_0389 | LA_0390 | Hypothetical protein. | Hypothetical protein. | 0.539 |
LA_0389 | clpA | LA_0389 | LA_0391 | Hypothetical protein. | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | 0.474 |
LA_0389 | miaB | LA_0389 | LA_0388 | Hypothetical protein. | 2-methylthioadenine synthetase. | 0.859 |
LA_0390 | LA_0274 | LA_0390 | LA_0274 | Hypothetical protein. | Lipoprotein releasing system, LolD ATPase component. | 0.499 |
LA_0390 | LA_0389 | LA_0390 | LA_0389 | Hypothetical protein. | Hypothetical protein. | 0.539 |
LA_0390 | clpA | LA_0390 | LA_0391 | Hypothetical protein. | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | 0.856 |
LA_0390 | lolE | LA_0390 | LA_0273 | Hypothetical protein. | Permease component of lipoprotein releasing system. | 0.499 |
LA_0390 | miaB | LA_0390 | LA_0388 | Hypothetical protein. | 2-methylthioadenine synthetase. | 0.705 |
LA_1480 | hemN | LA_1480 | LA_2563 | PLP dependent enzyme class III; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.587 |
LA_1480 | miaB | LA_1480 | LA_0388 | PLP dependent enzyme class III; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 2-methylthioadenine synthetase. | 0.445 |
LA_1480 | rlmN | LA_1480 | LA_0841 | PLP dependent enzyme class III; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Predicted Fe-S-cluster redox enzyme; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.697 |
clpA | LA_0274 | LA_0391 | LA_0274 | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | Lipoprotein releasing system, LolD ATPase component. | 0.535 |
clpA | LA_0389 | LA_0391 | LA_0389 | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | Hypothetical protein. | 0.474 |
clpA | LA_0390 | LA_0391 | LA_0390 | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | Hypothetical protein. | 0.856 |
clpA | lolE | LA_0391 | LA_0273 | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | Permease component of lipoprotein releasing system. | 0.501 |
clpA | miaB | LA_0391 | LA_0388 | ATP-dependent protease ClpA; Belongs to the ClpA/ClpB family. | 2-methylthioadenine synthetase. | 0.564 |
page 1 of 3