Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LA_0786Arabinose kinase. (374 aa)    
Predicted Functional Partners:
spoU
rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.773
LA_0788
SAM-dependent methyltransferase.
       0.773
LA_0789
Predicted SAM-dependent methyltransferase.
       0.773
gltA-2
Citrate synthase; Belongs to the citrate synthase family.
       0.651
LB_023
Ferrochelatase; Belongs to the ferrochelatase family.
  
     0.591
LA_0502
Fatty acid desaturase.
 
   
 0.480
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
     0.475
LA_0791
Transglycosylase.
       0.441
LA_2823
Putative lipoprotein.
  
     0.430
LA_3064
Putative lipoprotein.
  
     0.415
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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