STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrcA-2Membrane carboxypeptidase/penicillin-binding protein. (827 aa)    
Predicted Functional Partners:
pbpC
Penicillin binding protein.
  
  
0.931
mrcA-3
Membrane carboxypeptidase/penicillin-binding protein.
  
  
 
0.918
LA_1046
Hypothetical protein.
     
 0.864
nlpD-2
M23 family metalloendopeptidase.
 
     0.854
LA_0791
Transglycosylase.
 
   
 0.779
LA_1044
Predicted protein involved in cell shape determination.
     
 0.772
mltE
Transglycosylase.
 
   
 0.763
lysA
Diaminopimelate decarboxylase.
       0.757
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
       0.757
ribC
Riboflavin synthase subunit alpha.
      
 0.693
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.