Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LA_1908PaaI thioesterase. (142 aa)    
Predicted Functional Partners:
LB_218
Hypothetical protein.
  
     0.634
LA_0064
Hypothetical protein.
 
    0.616
LA_2958
Hypothetical protein.
  
     0.611
LA_0709
Hypothetical protein.
 
     0.608
LA_1030
TPR-repeat-containing protein.
 
     0.608
LA_3730
Putative lipoprotein.
  
     0.597
LA_4232
Hypothetical protein.
  
     0.596
LA_2737
Acyltransferase.
  
  
 0.582
LA_0575
Hypothetical protein.
  
     0.558
LA_1052
Hypothetical protein.
  
     0.549
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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