Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LA_1968Hypothetical protein. (550 aa)    
Predicted Functional Partners:
LA_1445
Outer membrane TolC superfamily protein.
  
     0.770
LA_4232
Hypothetical protein.
  
     0.761
LA_0709
Hypothetical protein.
  
     0.759
LA_2459
SMC-like protein.
  
     0.751
LA_3730
Putative lipoprotein.
  
     0.747
LA_0581
Outer membrane protein TolC.
  
     0.745
LA_2251
Phosphoesterase-related protein.
  
     0.745
LA_0425
Hypothetical protein.
  
     0.742
LA_0459
N-acetylmuramoyl-L-alanine amidase.
  
     0.741
LA_3067
TolB-related protein.
  
     0.741
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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