Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LA_2738 | LA_2739 | LA_2738 | LA_2739 | Hypothetical protein. | Conserved hypothetical protein. | 0.745 |
LA_2738 | LA_2741 | LA_2738 | LA_2741 | Hypothetical protein. | Hypothetical protein. | 0.653 |
LA_2738 | LA_2742 | LA_2738 | LA_2742 | Hypothetical protein. | Hypothetical lipoprotein. | 0.629 |
LA_2738 | truA | LA_2738 | LA_2740 | Hypothetical protein. | Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.653 |
LA_2739 | LA_2738 | LA_2739 | LA_2738 | Conserved hypothetical protein. | Hypothetical protein. | 0.745 |
LA_2739 | LA_2741 | LA_2739 | LA_2741 | Conserved hypothetical protein. | Hypothetical protein. | 0.716 |
LA_2739 | LA_2742 | LA_2739 | LA_2742 | Conserved hypothetical protein. | Hypothetical lipoprotein. | 0.680 |
LA_2739 | truA | LA_2739 | LA_2740 | Conserved hypothetical protein. | Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.716 |
LA_2741 | LA_2738 | LA_2741 | LA_2738 | Hypothetical protein. | Hypothetical protein. | 0.653 |
LA_2741 | LA_2739 | LA_2741 | LA_2739 | Hypothetical protein. | Conserved hypothetical protein. | 0.716 |
LA_2741 | LA_2742 | LA_2741 | LA_2742 | Hypothetical protein. | Hypothetical lipoprotein. | 0.791 |
LA_2741 | truA | LA_2741 | LA_2740 | Hypothetical protein. | Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.856 |
LA_2742 | LA_2738 | LA_2742 | LA_2738 | Hypothetical lipoprotein. | Hypothetical protein. | 0.629 |
LA_2742 | LA_2739 | LA_2742 | LA_2739 | Hypothetical lipoprotein. | Conserved hypothetical protein. | 0.680 |
LA_2742 | LA_2741 | LA_2742 | LA_2741 | Hypothetical lipoprotein. | Hypothetical protein. | 0.791 |
LA_2742 | truA | LA_2742 | LA_2740 | Hypothetical lipoprotein. | Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.791 |
rplQ | rpoA | LA_0766 | LA_0765 | 50S ribosomal protein L17. | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
rplQ | truA | LA_0766 | LA_2740 | 50S ribosomal protein L17. | Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.843 |
rplQ | truB | LA_0766 | LA_0945 | 50S ribosomal protein L17. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.812 |
rpoA | rplQ | LA_0765 | LA_0766 | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 50S ribosomal protein L17. | 0.996 |
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