STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtn-2Signal transduction protein containing a EAL domain. (297 aa)    
Predicted Functional Partners:
LA_2930
GGDEF family protein.
 
 
 0.907
LB_133
Putative diguanylate phosphodiesterase.
  
   
 0.884
LA_1483
Response regulator.
 
  
 0.872
LA_2933
GGDEF family protein.
 
 
 0.869
LA_2927
GGDEF family protein.
 
 
 0.866
LA_2932
GGDEF family protein.
 
 
 0.866
LA_2929
GGDEF family protein.
 
 
 0.864
LA_2827
Signal transduction protein containing REC and EAL domains.
  
  
 0.863
LA_2926
GGDEF family protein.
 
 
 0.859
LA_3929
Response regulator with GGDEF domain.
 
  
 0.846
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.