Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LA_3370Surface antigen OrfC lipoprotein. (456 aa)    
Predicted Functional Partners:
mdoC
Glucans biosynthesis protein.
       0.779
LA_4272
Hypothetical protein.
  
     0.722
LB_285
Hypothetical protein.
 
     0.712
LA_1936
Hydrolase or acyltransferase.
  
     0.694
LA_2746
Hypothetical protein.
  
     0.692
LA_1283
Hypothetical protein.
  
    0.682
LA_3614
Signal transduction protein with TPR and PP2C domain.
 
     0.675
LA_0581
Outer membrane protein TolC.
  
     0.644
LA_3247
TonB.
 
    0.639
LA_4046
Hypothetical protein.
  
     0.609
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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