Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LA_1470 | adk | LA_1470 | LA_0760 | Hypothetical protein. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.772 |
LA_1470 | dnaK | LA_1470 | LA_3705 | Hypothetical protein. | DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.640 |
LA_1470 | mdlB-2 | LA_1470 | LA_3630 | Hypothetical protein. | ATPase and permease components of ABC-type multidrug transport system. | 0.696 |
LA_1470 | pabA | LA_1470 | LA_3629 | Hypothetical protein. | Anthranilate synthase component II. | 0.501 |
LA_1470 | spoVK | LA_1470 | LA_2068 | Hypothetical protein. | AAA family ATPase. | 0.440 |
LA_3631 | caiA-6 | LA_3631 | LA_3627 | Receiver component of a two-component response regulator. | acyl-CoA dehydrogenase. | 0.412 |
LA_3631 | mdlB-2 | LA_3631 | LA_3630 | Receiver component of a two-component response regulator. | ATPase and permease components of ABC-type multidrug transport system. | 0.773 |
LA_3631 | pabA | LA_3631 | LA_3629 | Receiver component of a two-component response regulator. | Anthranilate synthase component II. | 0.568 |
LA_3631 | trpE | LA_3631 | LA_3628 | Receiver component of a two-component response regulator. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.568 |
adk | LA_1470 | LA_0760 | LA_1470 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | Hypothetical protein. | 0.772 |
adk | dnaK | LA_0760 | LA_3705 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.690 |
adk | mdlB-2 | LA_0760 | LA_3630 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | ATPase and permease components of ABC-type multidrug transport system. | 0.616 |
adk | sunT | LA_0760 | LA_1600 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | ABC transporter ATP-binding protein. | 0.435 |
caiA-6 | LA_3631 | LA_3627 | LA_3631 | acyl-CoA dehydrogenase. | Receiver component of a two-component response regulator. | 0.412 |
caiA-6 | fabG-2 | LA_3627 | LA_0971 | acyl-CoA dehydrogenase. | Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.628 |
caiA-6 | mdlB-2 | LA_3627 | LA_3630 | acyl-CoA dehydrogenase. | ATPase and permease components of ABC-type multidrug transport system. | 0.717 |
caiA-6 | pabA | LA_3627 | LA_3629 | acyl-CoA dehydrogenase. | Anthranilate synthase component II. | 0.755 |
caiA-6 | trpE | LA_3627 | LA_3628 | acyl-CoA dehydrogenase. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.626 |
dnaK | LA_1470 | LA_3705 | LA_1470 | DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Hypothetical protein. | 0.640 |
dnaK | adk | LA_3705 | LA_0760 | DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.690 |
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