Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LA_4232Hypothetical protein. (693 aa)    
Predicted Functional Partners:
LA_4228
Permease component of an ABC transporter complex.
       0.860
LA_4229
Dipeptide ABC transport system permease protein.
       0.860
dppD-2
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.860
dppD-3
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.860
LB_030
Intercellular adhesion protein C.
  
    0.829
LA_3927
TolC family protein.
  
  
 0.825
LA_0635
S-layer-like protein.
  
    0.806
LA_4233
Hypothetical protein.
       0.793
LA_1424
3-oxoacid CoA-transferase.
 
     0.791
LA_0610
FtsQ; Essential cell division protein.
  
    0.780
Your Current Organism:
Leptospira interrogans
NCBI taxonomy Id: 189518
Other names: L. interrogans serovar Lai str. 56601, Leptospira interrogans serovar Lai str. 56601
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