STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJV41457.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (472 aa)    
Predicted Functional Partners:
OJV44079.1
Outer membrane protein assembly factor BamD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.847
OJV42396.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.824
OJV42501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.824
OJV41458.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OJV41459.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.746
OJV41733.1
RIP metalloprotease RseP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.663
OJV43885.1
Molecular chaperone Skp; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.534
OJV42110.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.479
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.471
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.463
Your Current Organism:
Acidobacteriales bacterium 5955
NCBI taxonomy Id: 1895690
Other names: A. bacterium 59-55, Acidobacteriales bacterium 59-55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.