STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJX11905.1type-F conjugative transfer system pilin assembly protein TrbC; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (174 aa)    
Predicted Functional Partners:
OJX11907.1
type-F conjugative transfer system protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.821
OJX11910.1
type-IV secretion system protein TraC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.801
OJX11912.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.801
OJX11904.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.798
OJX11906.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
OJX11908.1
Signal peptidase I; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S26 family.
       0.798
OJX11911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.798
OJX11913.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.798
OJX11914.1
Type IV conjugative transfer system protein TraE; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.798
OJX11915.1
Type IV conjugative transfer system protein TraL; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.798
Your Current Organism:
Caedibacter sp. 3749
NCBI taxonomy Id: 1895735
Other names: C. sp. 37-49, Caedibacter sp. 37-49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.