Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJY16511.1 | OJY30517.1 | BGO98_30225 | BGO98_27790 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.538 |
OJY26789.1 | OJY30517.1 | BGO98_07225 | BGO98_27790 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.764 |
OJY27866.1 | OJY30517.1 | BGO98_42200 | BGO98_27790 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.957 |
OJY30517.1 | OJY16511.1 | BGO98_27790 | BGO98_30225 | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.538 |
OJY30517.1 | OJY26789.1 | BGO98_27790 | BGO98_07225 | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.764 |
OJY30517.1 | OJY27866.1 | BGO98_27790 | BGO98_42200 | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.957 |
OJY30517.1 | OJY30520.1 | BGO98_27790 | BGO98_27810 | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.410 |
OJY30517.1 | OJY30521.1 | BGO98_27790 | BGO98_27815 | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.410 |
OJY30517.1 | atpG | BGO98_27790 | BGO98_08670 | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP synthase F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.514 |
OJY30517.1 | tldD | BGO98_27790 | BGO98_15055 | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metalloprotease TldD; Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.929 |
OJY30520.1 | OJY30517.1 | BGO98_27810 | BGO98_27790 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.410 |
OJY30520.1 | OJY30521.1 | BGO98_27810 | BGO98_27815 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.966 |
OJY30521.1 | OJY30517.1 | BGO98_27815 | BGO98_27790 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.410 |
OJY30521.1 | OJY30520.1 | BGO98_27815 | BGO98_27810 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.966 |
atpG | OJY30517.1 | BGO98_08670 | BGO98_27790 | ATP synthase F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.514 |
tldD | OJY30517.1 | BGO98_15055 | BGO98_27790 | Metalloprotease TldD; Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology. | PmbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.929 |