STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (437 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.922
OJW06779.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.786
OJW27053.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.786
OJW13631.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.786
OJW27060.1
Xylose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.783
OJW24750.1
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.775
BGO49_02990
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.
  
  
 0.702
OJW10912.1
Glutathione-dependent formaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.649
OJW19969.1
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.587
OJW19490.1
Quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.498
Your Current Organism:
Planctomycetales bacterium 7110
NCBI taxonomy Id: 1895807
Other names: P. bacterium 71-10, Planctomycetales bacterium 71-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.