STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK60093.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
SHK78664.1
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).
 
  
  0.827
SHK60003.1
lipid-A-disaccharide synthase; Belongs to the LpxB family.
 
     0.752
SHL81161.1
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
  0.733
SHK60131.1
DNA polymerase-3 subunit alpha.
       0.622
SHK95191.1
Cell division and transport-associated protein TolQ.
  
     0.558
SHK94483.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
     0.512
SHK60039.1
DNA polymerase-3 subunit alpha.
       0.488
SHL23678.1
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase.
 
     0.459
SHK58180.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
     0.437
SHK53836.1
KDO2-lipid IV(A) lauroyltransferase.
    
  0.435
Your Current Organism:
Fibrobacter sp. UWH4
NCBI taxonomy Id: 1896210
Other names: F. sp. UWH4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.