STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKZ84506.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (75 aa)    
Predicted Functional Partners:
OKZ84507.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.739
OKZ84504.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.731
rnj
Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
  
    0.705
OKZ84505.1
Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.705
OKZ84502.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0342 family.
       0.690
OKZ84503.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.690
nadK
Hypothetical protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
     
 0.528
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.480
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.480
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.480
Your Current Organism:
Clostridium sp. 4414
NCBI taxonomy Id: 1896984
Other names: C. sp. 44_14, Clostridium sp. 44_14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.