OMH38941.1 protein (Motiliproteus sp. MSK221)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OMH38941.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)

Predicted Functional Partners:

OMH38200.1

0.814

OMH38940.1

0.639

OMH38892.1

0.589

OMH33993.1

0.585

OMH30004.1

0.520

OMH30006.1

0.520

OMH33994.1

0.519

OMH32870.1

0.507

OMH38283.1

0.405

Your Current Organism:

Motiliproteus sp. MSK221

NCBI taxonomy Id: 1897630
Other names: M. sp. MSK22-1, Motiliproteus sp. MSK22-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OMH30004.1	OMH30006.1	BGP75_18920	BGP75_18930	Flagellar biosynthesis protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal-body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.886
OMH30004.1	OMH38941.1	BGP75_18920	BGP75_00505	Flagellar biosynthesis protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
OMH30006.1	OMH30004.1	BGP75_18930	BGP75_18920	Flagellar basal-body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	Flagellar biosynthesis protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
OMH30006.1	OMH38941.1	BGP75_18930	BGP75_00505	Flagellar basal-body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
OMH32870.1	OMH38283.1	BGP75_14640	BGP75_08545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
OMH32870.1	OMH38941.1	BGP75_14640	BGP75_00505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
OMH33993.1	OMH33994.1	BGP75_13610	BGP75_13615	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
OMH33993.1	OMH38283.1	BGP75_13610	BGP75_08545	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
OMH33993.1	OMH38941.1	BGP75_13610	BGP75_00505	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
OMH33994.1	OMH33993.1	BGP75_13615	BGP75_13610	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
OMH33994.1	OMH38283.1	BGP75_13615	BGP75_08545	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
OMH33994.1	OMH38941.1	BGP75_13615	BGP75_00505	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
OMH38200.1	OMH38941.1	BGP75_08070	BGP75_00505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0246 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
OMH38283.1	OMH32870.1	BGP75_08545	BGP75_14640	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
OMH38283.1	OMH33993.1	BGP75_08545	BGP75_13610	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
OMH38283.1	OMH33994.1	BGP75_08545	BGP75_13615	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
OMH38283.1	OMH38941.1	BGP75_08545	BGP75_00505	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
OMH38892.1	OMH38940.1	BGP75_00510	BGP75_00500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
OMH38892.1	OMH38941.1	BGP75_00510	BGP75_00505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
OMH38940.1	OMH38892.1	BGP75_00500	BGP75_00510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452