STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpXATP-dependent Clp protease ATP-binding subunit ClpX. (402 aa)    
Predicted Functional Partners:
clpP
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
 
 0.992
ftsH
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
     
 0.772
AOP70186.1
Hypothetical protein.
       0.516
dnaX
DNA polymerase III subunit tau.
  
 
 0.498
clpB
Chaperone protein ClpB; Belongs to the ClpA/ClpB family.
  
 0.492
rpoD
RNA polymerase sigma factor RpoD; Belongs to the sigma-70 factor family.
  
  
 0.450
AOP70104.1
Hypothetical protein.
     
 0.435
valS
Valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.435
Your Current Organism:
bacterium AB1
NCBI taxonomy Id: 1898108
Other names: b. AB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.