STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49609.1Uncharacterized protein, YigZ family. (216 aa)    
Predicted Functional Partners:
SKB49623.1
4Fe-4S dicluster domain-containing protein.
       0.773
SKB46481.1
dUTP pyrophosphatase.
    
  0.648
SKB91942.1
D-lactate dehydrogenase.
    
  0.646
SKB90709.1
tRNA (adenine22-N1)-methyltransferase.
   
    0.645
SKB92328.1
Magnesium transporter.
  
    0.632
SKB49596.1
Recombination protein RecA.
   
   0.546
SKB49663.1
Tryptophan synthase, alpha chain.
       0.504
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.504
SKB47438.1
D-3-phosphoglycerate dehydrogenase.
    
  0.469
SKB76478.1
MAF protein.
    
  0.469
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.