STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB59121.116S rRNA pseudouridine516 synthase. (240 aa)    
Predicted Functional Partners:
SKC06391.1
Cytidylate kinase.
 
  
 0.924
SKB70527.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
      0.919
SKC08727.1
Exodeoxyribonuclease-3.
  
    0.843
SKB73584.1
GTP-binding protein.
 
  
 0.810
SKB59138.1
Penicillin-binding protein 1A.
  
    0.760
SKB62726.1
Segregation and condensation protein B.
  
  
 0.707
SKB62734.1
Condensin subunit ScpA.
 
  
 0.703
SKB70564.1
23S rRNA pseudouridine955/2504/2580 synthase.
   
 0.671
SKB70356.1
[FeFe] hydrogenase H-cluster maturation GTPase HydF.
  
  
 0.643
SKB71717.1
23S rRNA pseudouridine1911/1915/1917 synthase.
 
 
0.551
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.