STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB63137.1Amino acid adenylation domain-containing protein. (505 aa)    
Predicted Functional Partners:
SKB82834.1
Condensation domain-containing protein.
 
 0.996
SKB63111.1
Phosphopantetheine attachment site.
 
 0.986
SKB87200.1
Hypothetical protein.
 
 0.986
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.971
SKB64774.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.969
SKB66972.1
Hypothetical protein.
 
 0.967
SKB70104.1
[acyl-carrier-protein] S-malonyltransferase.
   
 0.951
SKB70096.1
3-oxoacyl-[acyl-carrier-protein] reductase.
 
 0.947
SKB70087.1
3-oxoacyl-[acyl-carrier-protein] synthase II.
 
 
 0.946
SKC04540.1
Glutamate-1-semialdehyde 2,1-aminomutase.
 
 
 0.933
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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