STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB63462.1Metal-dependent hydrolase, beta-lactamase superfamily II. (299 aa)    
Predicted Functional Partners:
SKB63455.1
Putative efflux protein, MATE family.
       0.668
SKB59713.1
Competence protein ComEA.
 
  
 0.524
SKB96741.1
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II.
     
 0.507
SKB90094.1
DNA processing protein.
 
  
 0.486
SKB89992.1
Nicotinamide-nucleotide amidase.
      
 0.482
SKB47697.1
Spermidine/putrescine transport system permease protein.
     
 0.477
SKC04348.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
     
 0.462
SKB86012.1
comF family protein.
  
  
 0.449
SKB63446.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
       0.426
SKB96719.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase.
     
 0.419
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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