STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB69764.1AraC-type DNA-binding protein. (327 aa)    
Predicted Functional Partners:
SKB64774.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.867
SKC00842.1
Glutamate synthase (ferredoxin).
    
  0.832
SKB89697.1
Rhamnulokinase.
 
   
 0.780
SKB82546.1
AraC-type DNA-binding protein.
 
 
   0.724
SKC09801.1
AraC-type DNA-binding protein.
 
  
  0.722
SKB96741.1
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II.
    
  0.720
SKC09364.1
AraC-type DNA-binding protein.
 
  
  0.720
SKB63261.1
AraC-type DNA-binding protein.
  
   0.694
SKB50763.1
Rhamnulose-1-phosphate aldolase.
 
     0.656
SKB80511.1
HAMP domain-containing protein.
     
  0.613
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.