STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB84469.1Cell cycle protein. (73 aa)    
Predicted Functional Partners:
SKB84458.1
Hypothetical protein.
      0.923
SKB64550.1
Peptidoglycan glycosyltransferase.
  
 0.840
SKB67151.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
  
 0.840
SKB71865.1
Penicillin-binding protein 2.
  
 0.840
SKB67105.1
Cell division protein FtsQ.
  
 
 0.794
SKB84445.1
DNA-binding transcriptional regulator, PadR family.
  
    0.776
SKB67133.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
  
 
 0.747
SKB84424.1
Protein of unknown function.
  
  
 0.666
SKB55121.1
UDP-N-acetylmuramate--L-alanine ligase.
  
 
 0.652
SKB54101.1
UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase.
  
  
 0.621
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.