STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB82223.1Transcriptional regulator, RpiR family. (276 aa)    
Predicted Functional Partners:
SKB46810.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.953
SKB48236.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.953
SKB57742.1
PTS system, sucrose-specific IIC component.
  
 
 0.953
SKB74269.1
PTS system IIA component, Glc family /PTS system IIB component, Glc family /PTS system IIC component, Glc family.
  
 
 0.953
SKB64774.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.915
SKB72909.1
PTS system, sucrose-specific IIC component.
  
 
 0.837
SKB82240.1
ADP-dependent phosphofructokinase/glucokinase.
 
     0.811
SKB82274.1
Xylulokinase.
       0.780
SKB82295.1
Ribose transport system ATP-binding protein.
       0.773
SKB82310.1
Ribose transport system permease protein.
  
    0.725
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.