STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB97610.1Membrane associated serine protease, rhomboid family. (353 aa)    
Predicted Functional Partners:
SKB96586.1
Membrane protease subunit HflK.
   
 0.766
SKB96592.1
Membrane protease subunit HflC.
   
 0.766
SKB96649.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.766
SKB57393.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.758
SKB76259.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.758
SKC00949.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.758
SKB97623.1
SCP-2 sterol transfer family protein.
       0.707
SKB71965.1
5-formyltetrahydrofolate cyclo-ligase.
  
    0.700
SKB56610.1
Cell division protease FtsH.
     
 0.509
SKB96607.1
Cell division protease FtsH.
     
 0.509
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.