STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC01315.1tRNA(Ile)-lysidine synthase. (452 aa)    
Predicted Functional Partners:
SKC01310.1
Hypoxanthine phosphoribosyltransferase.
 
 
 0.994
SKB56485.1
tRNA(adenine34) deaminase.
 
 0.970
SKC09552.1
GMP synthase (glutamine-hydrolysing).
  
 
 0.903
SKC00842.1
Glutamate synthase (ferredoxin).
    
  0.884
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.851
SKC01301.1
Cell division protease FtsH.
 
   
 0.793
SKB55163.1
Transcription-repair coupling factor.
 
  
 0.786
SKB77260.1
Sulfur carrier protein.
  
   0.776
SKC01319.1
Septum formation initiator.
  
    0.768
SKB83506.1
NADH-quinone oxidoreductase subunit F.
  
 
  0.760
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.