STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC02341.1Diaminopropionate ammonia-lyase. (406 aa)    
Predicted Functional Partners:
SKB64774.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.966
SKC02332.1
Putative selenium metabolism hydrolase.
 
 
 0.945
SKB72626.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 0.909
SKC06545.1
Threonine synthase.
  
 
 0.908
SKC07541.1
Threonine synthase.
  
 
 0.908
ygeW
Knotted carbamoyltransferase YgeW; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
    0.892
SKB72598.1
Acetolactate synthase, small subunit.
  
 
 0.889
SKB72609.1
Acetolactate synthase, small subunit.
  
 
 0.889
SKC05351.1
Branched-chain amino acid aminotransferase.
  
 
 0.887
SKB92583.1
L-threonine aldolase.
   
 
 0.849
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.