STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC08659.14-hydroxy-tetrahydrodipicolinate synthase. (294 aa)    
Predicted Functional Partners:
SKC08655.1
Dihydrodipicolinate reductase.
 
 
 0.995
asd
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.953
SKB64774.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.934
SKB87635.1
Homoserine dehydrogenase.
 
 
 0.889
SKB56945.1
Glucokinase.
  
 
 0.864
SKB89789.1
Diaminopimelate decarboxylase.
  
 0.858
SKB89049.1
Diaminopimelate epimerase.
 
 
 0.778
SKB57259.1
Ribonuclease J.
 
  
 0.765
SKB95625.1
Shikimate kinase.
  
  
 0.720
SKB92001.1
Aspartate kinase.
 
 
 0.712
Your Current Organism:
Lachnospiraceae bacterium
NCBI taxonomy Id: 1898203
Other names: L. bacterium
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.